What eight studies say about choosing a somatic variant caller
Eight published somatic SNV and indel caller comparisons, read side by side: rankings change between studies, indel accuracy is lower, and no study covers FFPE, ctDNA or panels.
Tagged
#variant-calling
2 articles tagged with #variant-calling.
What published benchmarks show about accelerating variant calling and genomic models
GPU and DRAGEN pipelines cut a whole-genome run from 17 to 39 hours on CPUs to between about 25 minutes and two and a half hours, and the one study that compared their calls with the CPU pipeline found close agreement. No study reruns a pipeline to test reproducibility, and FP8 gave a genomic foundation model at most 19.3% more throughput.
